CIMAS Publications

2006-2007

Click here for 2004-2006
Click here for 2002-2003
Click here for 1995-2000

Ault, J. S., S. G. Smith, J. Luo, M. E. Monaco, and R. S. Appeldoorn (2007), Length-based assessment of sustainability benchmark for reef fishes in Puerto Rico, Environmental Management, accepted.

Bandstra, L., B. Hales, and T. Takahashi (2006), High-frequency measurements of total CO2: Method development and first oceanographic observations, Mar. Chem., 100(1-2), 24-38.

Bartholomew, A., J.A. Bohnsack, S.G. Smith, J.S. Ault, D.E. Harper, and D.B. McClellan (2007), Influence of marine reserve size and boundary length on the initial response of exploited reef fishes in the Florida Keys National Marine Sanctuary, USA, Landscape Ecology, accepted.

Baringer, M. O., and S. L. Garzoli (2007), Meridional heat transport determined with expendable bathythermographs Part I: Error estimates from model and hydrographic data, Deep-Sea Res., Part I, 54(8), DOI:10.1016/j.dsr.2007.04.013, 1390-1401.

Baums, I. B., M. W. Miller, and M. E. Hellberg (2006), Geographic variation in clonal structure of a reef-building Caribbean coral, Acropora palmata, Ecol. Monogr., 76(4), 503-519.

Baums, I. B., K. D. Goodwin, T. Kiesling, D. Wanless, M. Diaz, and J. W. Fell (2007), Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand, Mar. Poll. Bull., 54, doi:10.1016/j.marpolbul.2006.12.018, 521-536.

Black, P. G., E. D’Asaro, W. M. Drennan, et al. (2007), Air-sea exchange in hurricane winds: Synthesis of observations from the Coupled Boundary Layer Air-Sea Transfer Experiment. Bull. Am. Meteorol. Soc., 88, 357-374.

Brix, H., N. Gruber, D. M. Karl, and N. R. Bates (2006), On the relationships between primary, net community, and export production in subtropical gyres, Deep Sea Res., Part II, 53(5-7), 698-717.

Broad, K., A. Pfaff, R. Taddei, S. Arumugam, U. Lall, and F. Assis de Souza Filho (2007), Climate, Stream Flow Prediction and Water Management in Northeast Brazil: beyond marginal gains toward gains for the marginal,  Climatic Change, in press.

Broecker, W. S., and R. Wanninkhof (2007), Mono lake radiocarbon: the mystery deepens, EOS Trans., 88, 141-142.

Chanson, M., and F. J. Millero (2006), The solubility of boric acid in electrolyte solutions, J. Sol. Chem., 35(5), doi:10.1007/s10953-006-9021.5.

Criales, M. M., J. Wang, J. A. Browder, M. Robblee, T. Jackson, and C. Hittle (2006), Variability in supply and cross-shelf transport of pink shrimp postlarvae into western Florida Bay, Fish. Bull., 104, 60-74.

Criales, M. M., J. A. Browder, C. N. K. Mooers, M.B. Robblee, H. Cardenas and T. L. Jackson (2007), Cross-shelf transport of pink shrimp larvae: interactions of tidal currents, larval vertical migrations and internal tides,  Mar. Ecol. Prog. Ser., in press.
 
Drennan, W. M., J. A. Zhang, J. R. French, C. McCormick, P. G. Black (2007), Turbulent fluxes in the hurricane boundary layer, II. Latent heat fluxes, J. Atmos. Sci., 64, 1103-1115.

Faunce, C. H., and J. E. Serafy (2007), Nearshore habitat use by gray snapper (Lutjanus griseus) and bluestriped grunt (Haemulon sciurus): environmental gradients and ontogenetic shifts, Bull. Mar. Sci., 80(3), 473-495.

Faunce, C. H., and J. E. Serafy (2007) Selective use of mangrove shorelines by snappers, grunts, and great barracuda, Mar. Ecol. Prog. Series, in press.

Feely, R. A., T. Takahashi, R. Wanninkhof, M. J. McPhaden, C. E. Cosca, and S. C. Sutherland (2006), Decadal variability of the air-sea CO2 fluxes in the equatorial pacific ocean, J. Geophys. Res., 111, doi:10.1029/2005JC003129.

Frias-Torres, S., A-M. Eklund, J. Schull, and J.,E. Serafy (2007), Activity patterns of juvenile goliath grouper, Epinephelus itajara, in a mangrove nursery, Bull. Mar. Sci., 80(3): 587-594.

French, J. R., W. M. Drennan, J. A. Zhang and P. G. Black (2007), Turbulent Fluxes in the Hurricane Boundary Layer, I. Momentum Flux, J. Atmos. Sci., 64, 1089-1102.

Garzoli, S. L., and M. O. Baringer (2007), Meridional heat transport determined with expandable bathythermographs Part II: South Atlantic Transport, Deep-Sea Res., Part I, 54(8), doi:10.1016/j.dsr.2007.04.013, 1402-1420.

Ghate, V. P., B. A. Albrecht, P. Kollias, H. H. Jonsson,  D. W. Breed (2007), Cloud seeding as a technique for studying aerosol-cloud Interactions in marine stratocumulus, Geophy. Res. Lett., in press.

Gleason, A. C. R., D. Lirman, D. E. Williams, N. R. Gracias, B. E. Gintert, H. Madjidi, R. P. Reid, G. C. Boynton, S. Negahdaripour, M. Miller, and P. Kramer (2007), Documenting hurricane impacts on coral reefs using two dimensional video-mosaic technology, Mar. Ecol., 28, 1-5.

González-Dávila, M., J. M. Santana-Casiano and F. J. Millero (2006), Competition between O2 and H2O2 in the oxidation of Fe(II) in natural waters, J. Sol. Chem., 35(1), 95-111,  DOI: 10.1007/s10953-006-8942-3.

Halliwell, G., L. K. Shay, S. D. Jacob, O. Smedstad, and E. Uhlhorn (2007), Improving ocean  model initialization for coupled tropical cyclone forecast models using GODAE nowcasts, Mon.  Wea.  Rev., accepted.

Hiscock, W., and F. J. Millero (2006), Alkalinity of the Anoxic Waters in the Western, Black Sea, Deep-Sea Res. II, 53, 1787-1801.

Hodyss, D., and S. J. Majumdar (2007), The contamination of ‘data impact’ in global models by rapidly growing mesoscale instabilities, Quart. J. Roy. Meteor. Soc., accepted.

Hood, R. R., E. A. Laws, R. A. Armstrong, N. R. Bates, C. W. Brown, C. A. Carlson, F. Chai, S. C. Doney, P. G. Falkowski, R. A. Feely, et al. (2006), Pelagic functional group modeling: Progress, challenges and prospects, Deep Sea Res. II, 53(5-7), 459-512.

Hoolihan, J. P. (2006), Estimating survival and recovery probabilities for Arabian Gulf sailfish from tag recovery studies, Bull. Mar. Sci., 79(3), 577-587.
 
Huang, X.-Lan, Y. Chen, and M. Shenker (2007), Solid phosphorus phases in aluminum- and iron-treated biosolids, J. Environ. Qual., 36, 549-556, DOI: 10.2134/jeq2006 .015521.

Jesien, R.V., A. M. Barse, S. Smyth, E. D. Prince, and J. E. Serafy (2006), Characterization of the white marlin (Tetrapturus albidus) recreational fishery off Maryland and New Jersey, Bull. Mar. Sci., 79(3), 647-657.

Jackson, D. L. and B .J. Soden (2007), Detection and correction of orbital drift on spectral radiances from HIRS observations, J. Atmos. Ocean. Tech., in press.

Kelble, C. R., E. M. Johns, et al. (2007). Salinity patterns of Florida Bay, Estuarine Coastal Shelf Sci., 71(1-2), 318-334.

LaGier, M. J., J. W. Fell, and K. D. Goodwin (2007), Electrochemical detection of harmful algae and other microbial contaminants in coastal waters using hand-held biosensors, Mar. Poll. Bull., 54, doi:10.1016/j.marpolbul.2006.12.017, 757-770.

Lee, K., L. T. Tong, F. J. Millero, C. L. Sabine, A. G. Dickson, C. Goyet, G.-H. Park, R. Wanninkhof, R. A. Feely, and R. M. Key (2006), Global relationships of total alkalinity with salinity and temperature in surface waters of the world's oceans, Geophys. Res. Lett., 33, L19605, doi: 10.1029/2006GL027207.

Lee, T. N., E. Johns, N. Melo, R. H. Smith, P. Ortner, and D. Smith, (2006), On Florida Bay Hypersalinity and Water Exchange, Bull. Mar. Sci., 79, 301-327.

Lee, S.-K., D.B. Enfield and C. Wang (2007), What drives seasonal onset and decay of the Western Hemisphere Warm Pool? J. Climate, 20(10), 2133-2146.

Lee, S.-K., and C. Wang (2007), Tropical Atlantic decadal oscillation and its impact on the equatorial atmosphere-ocean dynamics: A simple model study, J. Phys. Oceanogr., in press.

Lin et al. (2006), Tropical Intraseasonal Variability in 14 IPCC AR4 Climate Models. Part I: Convective Signals. J. Climate, 19, 2665-2690.

Luckhurst, B. E., E. D. Prince, E. D. Brothers, D. J. C. Snodgrass, and J. K. Llopiz (2006), Evidence of blue marlin (Makaira nigricans) spawning in Bermuda waters and elevated mercury levels in large specimens, Bull. Mar. Sci., 79(3), 691-704.

Lueger, H., R. Wanninkhof, D. W. R. Wallace, and A. Kortzinger (2006), CO2 fluxes in the subtropical and subarctic North Atlantic based on measurements from a volunteer observing ship, J Geophys. Res., 111, C06024, doi:06010.01029/02005JC003101.

Luo, Y., and F. J. Millero (2007), Stability constants for the formation of lead chloride complexes as a function of temperature and ionic strength, Geochim. Cosmochim. Acta, 71, 326-334.

Mainelli, M., M. DeMaria, L. K. Shay and G. Goni (2007) Application of Oceanic Heat Content Estimation to Operational Forecasting of Recent Atlantic Category 5 Hurricanes, Wea. Forecasting, in press.

Manzello, D. P., M. Brandt, T. B. Smith, D. Lirman, J. C. Hendee, and R. N. Nemeth (2007), Hurricanes benefit bleached corals, Proc. Nat. Acad. Sci. U.S.A., 104(29), 12035-12039. 

Manzello, D., P., R. Berkelmans, and J. C. Hendee (2007), Coral bleaching indices and thresholds for the Florida Reef Tract, Bahamas, and St. Croix, U.S. Virgin Islands, Mar. Poll. Bull., in press.

Manzello, Derek P., M. Brandt, T.B Smith, D. Lirman, J. C. Hendee, and R. S. Nemeth (2007), Hurricanes benefit bleached corals, Proc. Nat. Acad. Sci., in press.

Mapes, B. E., P. Liu, and N. Buenning (2005), Indian monsoon onset and Americas midsummer drought: out-of-equilibrium responses to smooth seasonal forcing, J. Climate, 18, 1109-1115.

Meinen, C. S., M. O. Baringer, and S. L. Garzoli (2006), Variability in Deep Western Boundary Current transports: Preliminary results from 26.5N in the Atlantic, Geophys. Res. Lett., 33, L17610, doi:10.1029/2006GL026965.

McGillis, W. R., and R. Wanninkhof (2006), Aqueous CO2 gradients for air-sea flux estimates, Mar. Chem., 98(1), 10-108.

Miller, T. J. (2007) A finite-state continuous-time approach to inferring regioanl movement rates of atlantic bluefin tuna using conventional tagging studies, Col. Vol. Sci. Pap. ICCAT, 60(4), 1109-1131.

Miller, M., and D. E. Williams (2007), Coral disease outbreak at Navassa, a remote Caribbean island, Coral Reefs, 26(1), 97-101.

Miller, M. W., I. B. Baums, and D. E. Williams (2007), Visual discernment of sexual recruits not feasible for Acropora palmata, Mar. Ecol. Prog. Ser., 335, 227-231.

Millero, F. J., T. B. Graham, F. Huang, H. Bustos-Serrano, and D. Pierrot (2006), Dissociation constants of carbonic acid in seawater as a function of salinity and temperature, Mar. Chem., 100, 80-94.

Millero, F. J., F. Huang, T. Graham, and D. Pierrot (2007), The dissociation of carbonic acid in NaCl solutions as a function of concentration and temperature, Geochim. Cosmochim. Acta, 71, 46-55, doi:10.1016/j.gca.2006.08.04.

Millero, F. J. (2007), The marine inorganic carbon cycle, Chem. Rev., 107, 308-341.

Muhs, D. R., J. R. Budahn, J. M. Prospero, and S. N. Carey (2007), Geochemical evidence for African dust inputs to soils of western Atlantic islands: Barbados, the Bahamas, and Florida., J. Geophys. Res., 112, F02009, doi:10.1029/2005JF000445.

Park, G.-H., K. Lee, R. Wanninkhof, and R. A. Feely (2006), Empirical temperature-based estimates of variability in the oceanic uptake of CO2 over the past 2 decades, J Geophys. Res., 111, doi:10.1029/2005JC003090.

Prince, E. D., and C. P. Goodyear (2006), Hypoxia based habitat compression of tropical pelagic fishes, Fisheries Oceanography, 15(6), 451-464.

Prince, E. D., D. B. Holts, D. Snodgrass, E. S. Orbesen, J. Luo, M. L. Domeier, and J. E. Serafy (2006), Transboundary movement of sailfish, Istiophorous platypteru, off the Pacific coast of central America, Bull. Mar. Sci., 79(3): 827-838.

Prince, E. D., D. J. C. Snodgrass, E. S. Orbesen, J. E. Serafy, J. P. Hoolihan, and J. E. Schratwieser (2007), Circle hooks, “J” hooks, and “drop-back” time: a hook performance study of the South Florida recreational live bait fishery for sailfish, Fish. Management Ecol., 14, 173-182.

Rice, P. H., C. P. Goodyear, E. D. Prince, D. Snodgrass and J. E. Serafy (2007), Further evidence against estimating hook depths using catenary geometry for pelagic longline fishing targeting swordfish, N. American J. Fisheries Management, in press

Santana-Casiano, J. M., M. González-Dávila,  and F. J. Millero (2006), The role of Fe(II) species on the oxidation of Fe(II) in natural waters in the presence of O2 and H2O2, Mar. Chem.,  99, 70-82.

Schultz, D. R., N. Perez, A. J. Mendez, D. Snodgrass, J. E. Serafy, E. D. Prince, W. A. Crow, Jr., and T. R. Capo (2007), Tracking gender factor in surface mucus: temporal patterns in individual koi,  J. Applied  Ichthyology,  1, 1-5.

Schultz, D. R., N. F. Perez, D. J. G. Snodgrass, E. D. Prince, F. Arocha, T. R. Capo, and C.-K. Tan (2006), Enzyme-linked immunosorbent assays and billfish gender: Testing muscle tissue and surface mucus in tagging studies, Bull. Mar. Sci., 79(3), 859-864.

Serafy, J. E., T. R. Capo, and C.R. Kelble, (2006), Live capture of billfishes: design and field testing of the continuous access nueston observation net (CANON), Bull. Mar. Sci., 79(3), 853-858.

Serafy, J. E., M. Valle, C. H. Faunce, and J. Luo (2007), Species-specific patterns of fish size and abundance along a subtropical mangrove shoreline: application of the delta approach, Bull. Mar. Sci., 80(3), 609-624.

Sharma, V. K., A. Moulin, F. J. Millero, and C. De Stefano (2006), Dissociation constants of protonated cysteine species in seawater media, Mar. Chem., 99, 52-61.

Shay, L. K., and E. Uhlhorn (2007), Loop Current  response to hurricanes Isidore and Lili,  Mon. Wea.  Rev., accepted.

Shivji, M. S., J. E. Magnussen, L. R. Beerkircher, G. Hinteregger, D. W. Lee, J. E. Serafy, and E. D. Prince (2006), Validity, identification, and distribution of roundscale spearfish, Tetrapturus georgii, (Teleostie: Istiophoridae): morphology and molecular evidence, Bull. Mar. Sci., 79(3), 483-491.
 
Sinigalliano, C. D., M. L. Gidley, T. Shibata, D. Whitman, T. H. Dixon, E. Laws, A. Hou, D. Bachoon, L. Brand, L. Amaral-Zettler, R. J. Gast, G. F. Steward, O. D. Nigro, R. Fujioka, W. Q. Betancourt, G. Vithanage, J. Mathews, L. E. Fleming, and H. M. Solo-Gabriele (2007), Impacts of Hurricanes Katrina and Rita on the microbial landscape of the New Orleans area, Proc.  Natl. Acad. Sci., 104(21), 9029-9034.

Takahashi, T., R. A. Feely, and R. Wanninkhof (2006), Decadal change of the surface water pCO2 in the North Pacific a synthesis of 35 years of observation, J Geophys. Res., 111, C07S05, doi:10.1029/2005JC003074.

Tribollet A, C. Langdon, and M. J. Atkinson (2006), Effects of elevated pCO2 on epilithic and endolithic metabolism of reef carbonates. Global Change Biol., 12, 1-9.

Tribollet, A., C. Langdon, S. Golubic, and M. J. Atkinson (2006), Endolithic microflora are major primary producers in dead carbonate substrates of Hawaiian coral reefs, J. Phycology, 42, 292-303.

Walsh, J. J., J. K. Jolliff, B. P. Darrow, J. M. Lenes, S. P. Milroy, D. A. Dieterle, K. S. Carder, F. R. Chen, G. A. Vargo, R. H. Weisberg, K. A. Fanning, F. E. Muller-Karger, K. A. Steidinger, C. A.. Heil, C. R. Tomas, J. M. Prospero, R. N. Lee, G. J. Kirkpatrick, T. E. Whitledge, D. A. Stockwell, T .A. Villareal, A. E. Jochens, and S.P. Bontempi, (2006), Red tides in the Gulf of Mexico: where, when, and why?, J. Geophys. Res., 111, C11003, doi:10.1029/ 2004JC002813.

Wang, C. (2007), Variability of the Caribbean low-level jet and its relations to climate, Clim. Dynamics, 29, 411-422.

Wang, C., and S.-K. Lee (2007) Atlantic warm pool, Caribbean low-level jet, and their potential impact on Atlantic hurricanes, Geophys. Res. Letts., 34, L02703, doi:10.1029/2006GL028579.

Wang, C., S.-K. Lee, and D. B. Enfield, (2007), Impact of the Atlantic warm pool on the summer climate of the western hemisphere, J. Climate, in press.

Wang, Z. A., X. Liu, R. H. Byrne, and R. Wanninkhof (2007), Simultaneous Spectrophotometric Flow-Through Measurements of Multiple Inorganic Carbon Parameters in Seawater: At-sea Test and Comparison, Analytica Chimica Acta., in press.

Wanninkhof, R., A. Olsen, and J. Triñanes (2007), Air-Sea CO2 Fluxes in the Caribbean Sea from 2002-2004, J. Mar. Sys., 66, 272-284.

Washington, R., M. C. Todd, G. Lizcano, I. Tegen, C. Flamant, I. Koren, P. Ginoux, S. Engelstaedter, A. Goudie, A. Warren, and J. M. Prospero (2006), Links between topography, wind, deflation, lakes and dust: The case of the Bodélé Depression, Chad, Geophys. Res. Lett., 33, L09401, doi:10.1029/2006GL025827.

Williams, D. E., and M. W. Miller (2006), Morphology offers no clues to asexual vs. sexual origin of small Acropora cervicornis (Scleractinia: Acroporidae) colonies, Rev. Biol. Trop., 54(Supplement 3), 145-151.

Zhang, J.-Z., X.-L. Huang (2007), Relative importance of solid-phase phosphorus and iron on the sorption behavior of sediments, Environ. Sci. Technol., 41, 8, 2789-2795, doi:10.1021/es061836q.

Zhang, C., D. S. Nolan and  C. D. Thorncroft (2007), Shallow Meridional Circulations in the Tropical Atmosphere, J. Climate, submitted.

Books and Chapters in Books

Chavez, F., T. Takahashi, W.-J. Cai, G. E. Friederich, B. E. Hales, R. Wanninkhof, and R. A. Feely (2007), The Coastal Ocean, in The First State of the Carbon Cycle Report (SOCCR), Chapter 15, in The North American Carbon Budget and Implications for the Global Carbon Cycle, edited by A. W. King and L. Dilling, U.S. Climate Change Science Program Synthesis and Assessment Product 2.2 , Washington, DC.

Goodwin, K. D., and R. W. Litaker (2007), Emerging technologies for monitoring recreational waters for bacteria and viruses, in Oceans and Human Health: Risk and Remedies from the Seas, edited by P. J. Walsh, S. L. Smith, L. E. Fleming, H. Solo-Gabriele, and W. H. Gerwick, Elsevier Science Publishers, New York, in press.

Hendee, J. C., E. Stabenau, L. Florit, D. Manzello, and C. Jeffris (2006), Infrastructure and capabilities of a near real-time meteorological and oceanographic in situ instrumented array, and its role in marine environmental decision support, in Remote Sensing of Aquatic Coastal Ecosystem Processes, edited by L. L. Richardson, and E.F. LeDrew, pp. 135-156, Kluwer Academic Press.

Kleisner, K., J. S. Nowlis, D. Olson, and D. Die (2007), An analysis of dolphinfish abundance related to environmental factors, using satellite-derived data and fishery-dependent data from the United States and Venezuelan longline fleet, in GIS/Spatial Analyses in Fishery and Aquatic Sciences, vol. 3, edited by T. Nishida, P. J. Kailola, and A. Caton,  Fishery-Aquatic GIS Research Group, Saitama, Japan, in press.

Kleypas, J. and C. Langdon (2007), Coral Reefs and Changing Seawater Chemistry, in AGU Monograph Coral Reefs and Climate Change: Science and Management, Coastal and Estuarine Studies, vol. 61, edited by Jonathan T. Phinney, William Skirving, Joanie Kleypas, Ove Hoegh-Guldberg, Al Strong, pp. 37-47.

Miller, M. W., and A. M. Szmant (2006), Lessons learned from experimental key-species restoration, in Coral Reef Restoration Handbook: Rehabilitation of an Ecosystem Under Siege, edited by W. F. Precht, pp. 219-234, CRC Press, Boca Raton, FL.

Millero, F. J. (2006), Chemical Oceanography, 3rd Edition, pp. 495, CRC Taylor and Francis Group, Boca Raton, FL.

Palmer, C. J., T. D. Bonilla, J. A. Bonilla, S. Elmir, K. D. Goodwin, H. M. Solo Gabriele, and A. Abdelzaher (2007), The future for monitoring, in Oceans and Human Health: Risk and Remedies from the Seas, edited by P. J. Walsh, S. L. Smith, L. E. Fleming, H. Solo-Gabriele, and W.H. Gerwick, Elsevier Science Publishers, New York, in press.

Sabine, C. L., R. A. Feely, and R. Wanninkhof (2006), Global Oceans: Ocean carbon, in The State of the Climate in 2005, edited by K. A. Shein, pp. S29-S30, Bull. Am. Meteorol. Soc.

Shay, L. K., and S. D. Jacob (2006), Relationship between oceanic energy fluxes and surface winds during tropical cyclone passage, Chapter 5, in Atmosphere-Ocean Interactions II, Advances in Fluid Mechanics, edited by W. Perrie, pp. 115-142, WIT Press, Southampton, UK.

Shay, L. K., (2007), Upper Ocean Structure: A Revisit of the Response to Strong Forcing Event, in Encyclopedia of Ocean Sciences, edited by John Steele, S.A. Thorpe, Karl Turekian and R. A. Weller, 35 p., Elsevier Press International, Oxford, UK, accepted.

Taddei, R. (2006), Rain Oracles in Modern Times: Media, Economic Development and the Transformations in the Social Identity of the Brazilian Backlands’ Rain Prophets (original title in Portuguese: Oráculos da Chuva em Tempos Modernos: Mídia, Desenvolvimento Econômico, e as Transformações na Identidade Social dos Profetas do Sertão), in Martins, Karla (org.), Os Profetas da Chuva. Fortaleza: Tempo D’Imagem.

Wanninkhof, R. (2007), The impact of different gas exchange formulations and wind speed products on global air-sea CO2 fluxes, in Transport at the Air Sea Interface, Measurements, Models and Parametrizations, edited by C. S. Garbe, et al., Springer, Heidelberg, in press.